Showing : rna seq • reset
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How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 3.6 years ago by ▴ 150 • written 4.6 years ago by • 0
2
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5
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3.3k
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Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 4.1 years ago by ★ 13k • written 4.1 years ago by ▴ 830
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3
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661
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Normalization of RNA seq data
RNA seq cpm
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
3
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3
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899
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Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 4.5 years ago by ▴ 220 • written 4.5 years ago by • 0
1
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4
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906
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Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 4.5 years ago by 65k • written 4.5 years ago by ▴ 30
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0
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501
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searching for specific RNA sequences
rna seq
4.5 years ago adeler001 • 0
0
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2
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789
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using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 4.6 years ago by ▴ 220 • written 4.6 years ago by • 0
0
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1
reply
556
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51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 4.7 years ago by 42k • written 4.7 years ago by • 0
0
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2
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957
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Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 4.7 years ago by 42k • written 4.7 years ago by • 0
1
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5
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1.3k
views
Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
5
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3
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980
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Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 5.0 years ago by ★ 3.0k • written 5.0 years ago by ▴ 20
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2
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1.9k
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adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.0 years ago Mozart ▴ 30
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Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
6.3 years ago lawarde.ankita1 ▴ 30
13 results • Page 1 of 1
Recent ...
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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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