Showing : rna seq • reset
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How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 5.4 years ago by ▴ 150 • written 6.4 years ago by • 0
2
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5
replies
5.8k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 5.9 years ago by ★ 13k • written 5.9 years ago by ▴ 840
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3
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1.6k
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Normalization of RNA seq data
RNA seq cpm
updated 5.9 years ago by ★ 4.0k • written 5.9 years ago by • 0
4
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4
replies
1.6k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 19 months ago by • 0 • written 6.3 years ago by • 0
1
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4
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1.4k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 6.3 years ago by 68k • written 6.3 years ago by ▴ 30
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0
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862
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searching for specific RNA sequences
rna seq
6.3 years ago adeler001 • 0
0
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2
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1.5k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 6.4 years ago by ▴ 260 • written 6.4 years ago by • 0
0
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1
reply
889
views
51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
0
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2
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1.6k
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Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
1
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5
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2.0k
views
Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 6.7 years ago by ★ 29k • written 6.7 years ago by • 0
5
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3
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1.8k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 6.7 years ago by ★ 3.0k • written 6.7 years ago by ▴ 20
1
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2
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2.9k
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adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
6.8 years ago Mozart ▴ 30
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0
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2.3k
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Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
8.0 years ago lawarde.ankita1 ▴ 30
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Answer: bcftools norm Equivalent by a2a2hd42aa • 0
it lacks a direct, single function equivalent to bcftools norm for variant normalization. Bioinformaticians often bridge this gap by using …
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
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Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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